If you’ve ever dreamed of turquoise waters, palm-lined beaches, island hopping, and hidden waterfalls, then the Philippines should be at the very top of your bucket list. This archipelago of more than 7,000 islands offers a blend of adventure, relaxation, and culture that is hard to find anywhere else. Planning a 3 week in The Philippines Itinerary is the perfect way to immerse yourself in everything the country has to offer without feeling rushed.
This guide takes you step by step through the Three Weeks Philippines Itinerary—from bustling Manila to laid-back Cebu, from the mystical island of Siquijor to the limestone cliffs of El Nido, and finishing with Coron’s legendary shipwreck diving. Along the way, we’ll cover where to stay, where to eat, and the best things to do at every stop.
For a visual overview, check out this 3 Week Philippines Itinerary Map to help plan your route.
Three Weeks Philippines Itinerary Overview
Table of contents
- Three Weeks Philippines Itinerary Overview
- Day 1: Arrive in Manila and Flight to Cebu
- Day 11: Siquijor to Bohol — Transit, Panglao Sunset, and Easy Vibes
- Day 12–14: Bohol — Chocolate Hills, Tarsiers & Island Hopping (Core to any 3 week in The Philippines Itinerary)
- Day 13: Adventure Day — Waterfalls & Bike Zip
- Day 14: Island Hopping (Balicasag & Virgin Island)
- Day 15: Flight to El Nido — Palawan Dreaming Begins
- Day 16–19: El Nido — Island-Hopping Heaven (Centerpiece of any 3 week in The Philippines Itinerary)
- Day 17: Tour C — Hidden Beaches & Snorkel Sites
- Day 18: Nacpan Beach & Sunset Hike
- Day 19: Free Day — Kayak, Coves & Chill
- Day 20: Ferry to Coron — Transit + Town Walk
- Day 21–22: Coron — Lagoons, Lakes & WWII Wrecks (Unmissable in a 3 week in The Philippines Itinerary)
- Day 22: Wreck Diving or Dugong Tour
- Day 23–24: Manila — History, Food & Nightlife (Finale of your 3 week in The Philippines Itinerary)
- Day 24: Markets, Art, and Departure
- FAQs — 3 week in The Philippines Itinerary
- Pro Tips for Seamless Travel (Quick-Scan)
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Here’s a quick breakdown before diving into each day in detail:
- Day 1: Arrive in Manila → Cebu
- Day 2: Bus to Moalboal
- Day 3 – 6: Explore Moalboal
- Day 7: Moalboal → Siquijor
- Day 8 – 10: Discover Siquijor
- Day 11: Siquijor → Bohol
- Day 12 – 14: Adventure in Bohol
- Day 15: Flight to El Nido
- Day 16 – 19: El Nido island hopping
- Day 20: Ferry to Coron
- Day 21 – 22: Coron shipwrecks & lagoons
- Day 23 – 24: Manila exploration & wrap-up
Day 1: Arrive in Manila and Flight to Cebu
Your journey starts in Manila, the bustling capital. Since your itinerary is packed, it’s best to catch a domestic flight straight to Cebu.
Where to Stay in Cebu
| Hotel | Type | Booking Link |
|---|---|---|
| Radisson Blu Cebu | Luxury | Book Here |
| Quest Hotel & Conference Center | Mid-Range | Book Here |
| Cebu Guesthouse | Budget | Book Here |
Where to Eat in Cebu
| Restaurant | Cuisine | Booking Link |
|---|---|---|
| House of Lechon | Filipino | Book Here |
| Lantaw Native Restaurant | Local | Book Here |
| La Vie Parisienne | French Bakery & Wine | Book Here |
Things to Do
- Walk along Colon Street (oldest street in the Philippines).
- Visit Magellan’s Cross.
- Explore the vibrant IT Park for nightlife.
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Day 2–6: Moalboal – Diving, Sardines, and Waterfalls
Moalboal is one of Cebu’s crown jewels, famous for its vibrant marine life, relaxed vibes, and easy access to adventures both on land and in the sea. Spending 4 full days here allows you to dive into some of the Philippines’ most unforgettable experiences.
Where to Stay in Moalboal
| Hotel | Type | Booking Link |
|---|---|---|
| Dolphin House Resort Moalboal | Luxury | Book Here |
| Quo Vadis Dive Resort | Mid-Range | Book Here |
| Chief Mau Hostel | Budget | Book Here |
Where to Eat in Moalboal
| Restaurant | Cuisine | Booking Link |
|---|---|---|
| Ven’z Kitchen | Filipino | Book Here |
| Shaka Moalboal | Healthy/Vegetarian | Book Here |
| Lantaw Restaurant | Local Favorites | Book Here |
Best Things to Do in Moalboal
- Swim with the Sardine Run
Right off Panagsama Beach, you’ll find millions of sardines moving as one—a breathtaking underwater ballet. Bring snorkeling gear and you’ll be swimming in the middle of them. - Pescador Island Diving
Moalboal is a diver’s paradise. Book a dive trip to Pescador Island and discover incredible reefs, turtles, and even occasional reef sharks. If you’re interested in diving, you’ll also love reading about Diving in El Nido, another highlight later in this 3 week in The Philippines Itinerary. - Kawasan Falls Canyoneering
Just a short ride away, Kawasan Falls is the perfect place for adventure. Join a canyoneering tour where you’ll climb, jump, and swim your way through turquoise waters. - White Beach (Basdaku Beach)
If you want something calmer, head to White Beach for soft sand and a more relaxed swimming experience. - Sunset Watching at Panagsama
Every evening, locals and travelers gather at the beach to watch the sun melt into the ocean. Grab a beer and soak in the atmosphere.
Day 7–10: Siquijor – The Mystical Island
Known as the “Island of Fire,” Siquijor has long carried a mystical reputation. But today, travelers come here for its laid-back charm, crystal-clear waters, and magical sunsets. Spending 3–4 days in Siquijor gives you enough time to experience its waterfalls, beaches, caves, and unique island culture.
Getting There from Moalboal
From Moalboal, travel back to Cebu City and take a ferry to Siquijor (usually via Dumaguete). The journey takes time, but it’s worth every minute once you arrive.
Where to Stay in Siquijor
| Hotel | Type | Booking Link |
|---|---|---|
| Coco Grove Beach Resort | Luxury | Book Here |
| Infinity Heights Resort | Mid-Range | Book Here |
| Tori’s Backpacker Paradise | Budget | Book Here |
Where to Eat in Siquijor
| Restaurant | Cuisine | Booking Link |
|---|---|---|
| Baha Bar | Filipino Fusion | Book Here |
| Dagsa | Seafood | Book Here |
| Dolce Amore | Italian | Book Here |
Best Things to Do in Siquijor
- Cambugahay Falls
One of the most popular attractions, this three-tiered waterfall is perfect for swimming, rope swinging, and lounging by turquoise pools. - Salagdoong Beach
Known for its cliff-jumping spots, this beach is a must for thrill-seekers. - Paliton Beach
Often called the “Little Boracay of Siquijor,” Paliton offers powdery sand and calm waters, making it a top choice for a sunset swim. - Balete Tree & Fish Spa
Visit the centuries-old Balete tree, believed to hold mystical energy, and enjoy a quirky foot spa with hundreds of tiny fish. - Motorbike Loop Around the Island
The best way to explore Siquijor is by renting a scooter. Ride around the island, stop at hidden coves, caves, and meet friendly locals along the way.
Travel Tip
Siquijor feels like a world away from the busy tourist circuits of the Philippines. Its slower pace makes it an excellent balance in your Three Weeks Philippines Itinerary after the activity-filled days in Moalboal.
Day 11: Siquijor to Bohol — Transit, Panglao Sunset, and Easy Vibes
A smooth travel day in your 3 week in The Philippines Itinerary. Take the morning ferry from Siquijor to Tagbilaran (Bohol), then transfer 30–40 minutes to Panglao Island for beaches and sunset cocktails.
Best Things to Do (Day 11)
- Alona Beach stroll: Check the vibe, scout dive shops, and grab a fresh buko (coconut).
- Hennan beachfront sunset: Order a mango shake and watch fire dancers spark up the evening.
- Massage + early night: Reset after transit so you’re fresh for Bohol’s inland adventures.
Where to Stay (Day 11)
| Hotel | Type | Booking Link |
|---|---|---|
| Amorita Resort (Cliffside over Alona) | Luxury | Book Here |
| Bluewater Panglao | Mid-Range | Book Here |
| Alona Hammocks | Budget | Book Here |
Where to Eat (Day 11)
| Restaurant | Cuisine | Booking Link |
|---|---|---|
| Shaka Café Panglao | Healthy Bowls | Book Here |
| Giuseppe Pizzeria | Italian | Book Here |
| Bohol Bee Farm Restaurant | Organic Filipino | Book Here |
Day 12–14: Bohol — Chocolate Hills, Tarsiers & Island Hopping (Core to any 3 week in The Philippines Itinerary)
Bohol blends jungle adventures with chill beach days. Base yourself in Panglao for easy access to Alona/Dumaluan Beaches, and day-trip inland to the hills, rivers, and forests.
Day 12: Countryside Circuit (Chocolate Hills + Tarsiers)
Top Experiences
- Chocolate Hills Viewpoint: See 1,200+ perfect mounds; best views morning or late afternoon.
- Tarsier Sanctuary (Corella): Meet the wide-eyed nocturnal primates respectfully (no flash).
- Loboc River Cruise: Buffet lunch while gliding through emerald water; watch local performances.
- Man-made Mahogany Forest: Cool, shaded road tunnel—photo stop.
Where to Stay (Day 12)
| Hotel | Type | Booking Link |
|---|---|---|
| The Bellevue Resort (Dumaluan) | Luxury | Book Here |
| Modala Beach Resort | Mid-Range | Book Here |
| Panglao Sea Breeze Cottages | Budget | Book Here |
Where to Eat (Day 12)
| Restaurant | Cuisine | Booking Link |
|---|---|---|
| Gerarda’s (Tagbilaran) | Classic Filipino | Book Here |
| Loboc River Floating Resto | Buffet | Book Here |
Looking for cheap flights or all-in-one travel deals? Check out:
Trip.com (Competitive flight & hotel bundles)
Expedia (Flight + hotel savings)
WayAway.io (Cashback on flights & travel bookings)
Day 13: Adventure Day — Waterfalls & Bike Zip
Top Experiences
- Hinagdanan Cave: Limestone cave with an underground pool; go early to beat crowds.
- Bohol Bike Zip: Pedal across a suspended cable over Loboc—epic views for thrill-seekers.
- Dimiao Twin Falls (Pahangog): Lush cascade and jungle vibes; swim in cool pools.
- Stand-Up Paddle at Loboc: Golden-hour glide if you skipped the zip or want something calmer.
Where to Stay (Day 13)
| Hotel | Type | Booking Link |
|---|---|---|
| South Palms Resort | Luxury | Book Here |
| Bird of Paradise Bohol | Mid-Range | Book Here |
| Alona Hidden Dream | Budget | Book Here |
Where to Eat (Day 13)
| Restaurant | Cuisine | Booking Link |
|---|---|---|
| The Buzz Café (Bohol Bee Farm) | Organic/Local | Book Here |
| Aplaya Restaurant (South Palms) | Seafood | Book Here |
Day 14: Island Hopping (Balicasag & Virgin Island)
Top Experiences
- Balicasag Marine Sanctuary: Snorkel with turtles and schools of reef fish; divers can do wall dives.
- Virgin Island Sandbar: Knee-deep turquoise water, floating seafood grills, and halo-halo stands.
- Beach time: Wrap up with a low-key sunset on Dumaluan (calmer than Alona).
Where to Stay (Day 14)
| Hotel | Type | Booking Link |
|---|---|---|
| Mithi Resort & Spa (Private islet) | Luxury | Book Here |
| Nirvana Beach Resort | Mid-Range | Book Here |
| Bamboo House Panglao | Budget | Book Here |
Where to Eat (Day 14)
| Restaurant | Cuisine | Booking Link |
|---|---|---|
| Paprika (Amorita) | Upscale Fusion | Book Here |
| Prawn Farm (Island City Mall) | Seafood | Book Here |
Budget Tip
Estimating costs for this Three Weeks Philippines Itinerary? Use this handy guide to plan your daily spend on food, transport, and tours: Philippines Travel Budget.
Day 15: Flight to El Nido — Palawan Dreaming Begins
Travel from Panglao (TAG) via Cebu or Manila to El Nido (ENI). Once you’ve checked in, take it easy—El Nido days are full on. In your 3 week in The Philippines Itinerary, El Nido is the limestone masterpiece.
Best Things to Do (Day 15)
- Town beach sunset or Corong-Corong for sweeping views over karst islets.
- Gear up: Book your island-hopping for the next 2–3 days (Tours A, B, C are the classics).
- Stroll El Nido town: Shop for reef-safe sunscreen and dry bags.
Where to Stay (Day 15)
| Hotel | Type | Booking Link |
|---|---|---|
| Pangulasian Island (Luxury Eco) | Luxury | Book Here |
| Seda Lio (Near airport) | Mid-Range | Book Here |
| Frendz Hostel El Nido | Budget | Book Here |
Where to Eat (Day 15)
Planning deep?
Don’t miss the El Nido Travel Guide for neighborhoods, beaches, and tour comparisons. If diving’s your thing, bookmark Diving in El Nido for reefs, sites, and operators.
Day 16–19: El Nido — Island-Hopping Heaven (Centerpiece of any 3 week in The Philippines Itinerary)
Day 16: Tour A — Lagoons & Beaches
Highlights
- Big Lagoon (kayak through emerald channels)
- Small Lagoon or Secret Lagoon (depending on operator)
- Shimizu Island (snorkel & lunch)
- 7 Commandos Beach (sunset swim)
Where to Stay (Day 16)
| Hotel | Type | Booking Link |
|---|---|---|
| Cauayan Island Resort | Luxury | Book Here |
| Cuna Hotel (Town) | Mid-Range | Book Here |
| Spin Designer Hostel | Budget | Book Here |
Where to Eat (Day 16)
| Restaurant | Cuisine | Booking Link |
|---|---|---|
| Osaka Castle | Japanese | Book Here |
| Trattoria Altrove Lio | Italian | Book Here |
| Kapeng Barako | Coffee/Brunch | Book Here |
Day 17: Tour C — Hidden Beaches & Snorkel Sites
Highlights
- Helicopter Island (photogenic peak)
- Matinloc Shrine (viewpoint + eerie ruins)
- Secret Beach (swim through a rock crack!)
- Star Beach (snorkel gardens)
Where to Stay (Day 17)
| Hotel | Type | Booking Link |
|---|---|---|
| Buko Beach Resort | Luxury | Book Here |
| Cadlao Resort | Mid-Range | Book Here |
| Amos Hostel | Budget | Book Here |
Where to Eat (Day 17)
| Restaurant | Cuisine | Booking Link |
|---|---|---|
| Big Bad Thai | Thai | Book Here |
| Artcafé | Café/Filipino/Intl | Book Here |
| Grape Escape | Tapas/Wine | Book Here |
Day 18: Nacpan Beach & Sunset Hike
Highlights
- Nacpan–Calitang Twin Beach: 4 km of golden sand, surf, and laid-back bars.
- Las Cabañas/Marimegmeg: Zipline over the sea then sunset cocktails.
- Optional: Dive El Nido (North Rock, South Miniloc) — read more here: Diving in El Nido.
Where to Stay (Day 18)
| Hotel | Type | Booking Link |
|---|---|---|
| Nacpan Beach Glamping | Luxury-tented | Book Here |
| Charlie’s El Nido | Mid-Range | Book Here |
| Outpost Beach Hostel | Budget | Book Here |
Where to Eat (Day 18)
| Restaurant | Cuisine | Booking Link |
|---|---|---|
| Sunmai Nacpan | Beach Bar/Seafood | Book Here |
| Manille Café | Coffee/Pastries | Book Here |
Day 19: Free Day — Kayak, Coves & Chill
Ideas
- Kayak to Cadlao Lagoon if seas are calm.
- Duli Beach for beginner surf.
- Massage + gelato wind-down before the Coron ferry tomorrow.
Where to Stay (Day 19)
| Hotel | Type | Booking Link |
|---|---|---|
| Matinloc Resort (Island) | Luxury | Book Here |
| H Hotel El Nido | Mid-Range | Book Here |
| Pawikan Hostel | Budget | Book Here |
Where to Eat (Day 19)
| Restaurant | Cuisine | Booking Link |
|---|---|---|
| Rooftop (H Hotel) | Modern Filipino | Book Here |
| Taste El Nido | Healthy Bowls | Book Here |
| Falafel Restaurant | Middle Eastern | Book Here |
Day 20: Ferry to Coron — Transit + Town Walk
Take the El Nido → Coron fast ferry (typically ~4–5 hours). Check in, then explore Coron Town on foot.
Best Things to Do (Day 20)
- Maquinit Hot Springs soak at dusk.
- Mt. Tapyas stairs for panoramic sunset over islets (bring water).
- Gear check if you’re diving WWII wrecks tomorrow.
Where to Stay (Day 20)
| Hotel | Type | Booking Link |
|---|---|---|
| Two Seasons Coron Island (Bulalacao) | Luxury | Book Here |
| The Funny Lion | Mid-Range | Book Here |
| Hop Hostel | Budget | Book Here |
Where to Eat (Day 20)
| Restaurant | Cuisine | Booking Link |
|---|---|---|
| Altrove Coron | Italian | Book Here |
Day 21–22: Coron — Lagoons, Lakes & WWII Wrecks (Unmissable in a 3 week in The Philippines Itinerary)
Day 21: Coron Island Hopping (Kayangan & Barracuda)
Highlights
- Kayangan Lake: Glass-clear lake + iconic viewpoint.
- Twin Lagoon: Swim through a rock arch; thermocline feels wild.
- Siete Pecados: Snorkel coral gardens with vibrant fish.
- CYC Beach: Quick sandy stop if time allows.
Where to Stay (Day 21)
| Hotel | Type | Booking Link |
|---|---|---|
| Club Paradise Palawan | Luxury | Book Here |
| Bacau Bay Resort | Mid-Range | Book Here |
| Dayon Hostel | Budget | Book Here |
Where to Eat (Day 21)
Day 22: Wreck Diving or Dugong Tour
Choose your adventure
- Wreck Diving: WWII Japanese supply ships (e.g., Lusong Gunboat, Akitsushima for advanced divers).
- Dugong Spotting (Calauit area): Full-day ethical tours with marine guides.
- Alt plan: Beach day at Malcapuya + Banana + Bulog Dos.
Where to Stay (Day 22)
| Hotel | Type | Booking Link |
|---|---|---|
| El Rio y Mar Resort | Luxury | Book Here |
| Coron Soleil Garden Resort | Mid-Range | Book Here |
| SeaHorse Guest House | Budget | Book Here |
Where to Eat (Day 22)
| Restaurant | Cuisine | Booking Link |
|---|---|---|
| Fika Indulgence | Café/Filipino | Book Here |
| Hermanos Tapas | Tapas | Book Here |
| Santino’s Grill | Ribs/Filipino | Book Here |
Day 23–24: Manila — History, Food & Nightlife (Finale of your 3 week in The Philippines Itinerary)
Fly Coron (USU) → Manila (MNL). Use your last days for culture, coffee, and culinary hits.
Day 23: Intramuros & Binondo
Highlights
- Intramuros: Fort Santiago, San Agustin Church, cobbled streets by bambike tour.
- National Museum Complex: Philippine art, anthropology, and natural history.
- Binondo (World’s oldest Chinatown): Dumplings, hopia, and heritage shophouses.
- Optional: Day trip teaser for next time — the Cordillera rice terraces. If you’re extending, read Hiking the Rice Terraces of Batad and Banaue.
Where to Stay (Day 23)
| Hotel | Type | Booking Link |
|---|---|---|
| The Peninsula Manila (Makati) | Luxury | Book Here |
| Seda Bonifacio Global City | Mid-Range | Book Here |
| Lub d Makati | Budget | Book Here |
Where to Eat (Day 23)
| Restaurant | Cuisine | Booking Link |
|---|---|---|
| Ilustrado (Intramuros) | Filipino/Spanish | Book Here |
| Sincerity Café (Binondo) | Chinese/Filipino | Book Here |
Day 24: Markets, Art, and Departure
Highlights
- Legazpi Sunday Market (if it’s Sunday) or Salcedo Saturday Market: Crafts and regional eats.
- BGC street art walk + coffee crawl.
- Last-minute shopping at Greenbelt/Power Plant.
Where to Stay (Day 24)
| Hotel | Type | Booking Link |
|---|---|---|
| Shangri-La The Fort | Luxury | Book Here |
| I’M Hotel (Poblacion) | Mid-Range | Book Here |
| Z Hostel (Rooftop views) | Budget | Book Here |
Where to Eat (Day 24)
| Restaurant | Cuisine | Booking Link |
|---|---|---|
| Wildflour Café + Bakery | Brunch/Pastries | Book Here |
| Manam | Filipino Classics | Book Here |
| The Curator | Coffee/Cocktails | Book Here |
Wrapping Up — Your Perfect Three Weeks Philippines Itinerary
From Cebu’s sardines and Siquijor’s waterfalls to Bohol’s Chocolate Hills, El Nido’s karst lagoons, and Coron’s wreck dives, this 3 week in The Philippines Itinerary hits the country’s greatest hits at a traveler-friendly pace. Use this map to visualize the route and distances: 3 Week Philippines Itinerary Map. Want a printable summary? Cross-check with this companion overview: 3 Week Philippines Itinerary.
FAQs — 3 week in The Philippines Itinerary
Pro Tips for Seamless Travel (Quick-Scan)
- Connectivity: Buy a Globe or Smart SIM at the airport for data and eSIM-friendly top-ups.
- Ferries & flights: Build a buffer day before your international flight home in case of weather delays.
- Eco-ethics: Wear reef-safe sunscreen, don’t touch coral, and minimize plastic.
- Packing: Mask/snorkel set saves rentals, plus a microfiber towel and dry bag are clutch for island days.
Read More About Philippines
- Route planning: 3 Week Philippines Itinerary Map
- Deep-dive overview: 3 Week Philippines Itinerary
- Palawan specifics: El Nido Travel Guide and Diving in El Nido
- Budgeting: Philippines Travel Budget
- Side trip: Hiking the Rice Terraces of Batad and Banaue